Machine learning and hypothesis driven optimization of bull semen … – Nature.com

Posted: December 29, 2022 at 12:20 am


without comments

Ugur, M. R. et al. Advances in cryopreservation of bull sperm. Front. Vet. Sci. 6, 115 (2019).

Article Google Scholar

Benson, J. D., Woods, E. J., Walters, E. M. & Critser, J. K. The cryobiology of spermatozoa. Theriogenology 78, 16821699 (2012).

Article CAS Google Scholar

Amirat, L. et al. Bull semen in vitro fertility after cryopreservation using egg yolk LDL: A comparison with Optidyl, a commercial egg yolk extender. Theriogenology 61, 895907 (2004).

Article CAS Google Scholar

Yoon, S. J., Kwon, W. S., Rahman, M. S., Lee, J. S. & Pang, M. G. A novel approach to identifying physical markers of cryo-damage in bull spermatozoa. PLoS ONE 10, 1 (2015).

Article Google Scholar

Medeiros, C. M. O., Forell, F., Oliveira, A. T. D. & Rodrigues, J. L. Current status of sperm cryopreservation: Why isnt it better?. Theriogenology 1, 53275344 (2002).

Google Scholar

Pojprasath, T., Lohachit, C., Techakumphu, M., Stout, T. & Tharasanit, T. Improved cryopreservability of stallion sperm using a sorbitol-based freezing extender. Theriogenology 75, 17421749 (2011).

Article CAS Google Scholar

Lonergan, P. Historical and futuristic developments in bovine semen technology. Animal 12, s4s18 (2018).

Article CAS Google Scholar

Mousavi, S. M. et al. Comparison of two different antioxidants in a nano lecithin-based extender for bull sperm cryopreservation. Anim. Reprod. Sci. 209, 1 (2019).

Article Google Scholar

Murphy, E. M. et al. Influence of bull age, ejaculate number, and season of collection on semen production and sperm motility parameters in holstein friesian bulls in a commercial artificial insemination centre. J. Anim. Sci. 96, 24082418 (2018).

Article Google Scholar

Thurston, L. M., Watson, P. F. & Holt, W. V. Semen cryopreservation: A genetic explanation for species and individual variation?. Cryo-Letters 23, 255262 (2002).

Google Scholar

Sieme, H., Oldenhof, H. & Wolkers, W. F. Mode of action of cryoprotectants for sperm preservation. Anim. Reprod. Sci. 169, 25 (2016).

Article CAS Google Scholar

Ashrafi, I., Kohram, H. & Ardabili, F. F. Antioxidative effects of melatonin on kinetics, microscopic and oxidative parameters of cryopreserved bull spermatozoa. Anim. Reprod. Sci. 139, 2530 (2013).

Article CAS Google Scholar

ChaithraShree, A. R. et al. Effect of melatonin on bovine sperm characteristics and ultrastructure changes following cryopreservation. Vet. Med. Sci. 6, 177186 (2020).

Article CAS Google Scholar

Barbas, J. P. & Mascarenhas, R. D. Cryopreservation of domestic animal sperm cells. Cell Tissue Bank. 10, 4962 (2009).

Article CAS Google Scholar

Galbraith, S. C., Bhatia, H., Liu, H. & Yoon, S. Media formulation optimization: current and future opportunities. Curr. Opin. Chem. Eng. 22, 4247 (2018).

Article Google Scholar

Grzesik, P. & Warth, S. C. One-time optimization of advanced T cell culture media using a machine learning pipeline. Front. Bioeng. Biotechnol. 9, 1 (2021).

Article Google Scholar

Bedbrook, C. N., Yang, K. K., Rice, A. J., Gradinaru, V. & Arnold, F. H. Machine learning to design integral membrane channelrhodopsins for efficient eukaryotic expression and plasma membrane localization. PLoS Comput. Biol. 13, 1 (2017).

Article Google Scholar

Pollock, K., Budenske, J. W., McKenna, D. H., Dosa, P. I. & Hubel, A. Algorithm-driven optimization of cryopreservation protocols for transfusion model cell types including Jurkat cells and mesenchymal stem cells. J. Tissue Eng. Regen. Med. 11, 28062815 (2017).

Article CAS Google Scholar

Pi, C. H., Dosa, P. I. & Hubel, A. Differential evolution for the optimization of DMSO-free cryoprotectants: Influence of control parameters. J. Biomech. Eng. 142, 110 (2020).

Article Google Scholar

Li, R., Hornberger, K., Dutton, J. R. & Hubel, A. Cryopreservation of human iPS cell aggregates in a DMSO-free solutionAn optimization and comparative study. Front. Bioeng. Biotechnol. 8, 1 (2020).

Article Google Scholar

Desai, K. M., Survase, S. A., Saudagar, P. S., Lele, S. S. & Singhal, R. S. Comparison of artificial neural network (ANN) and response surface methodology (RSM) in fermentation media optimization: Case study of fermentative production of scleroglucan. Biochem. Eng. J. 41, 266273 (2008).

Article CAS Google Scholar

Ba, D. & Boyac, H. Modeling and optimization II: Comparison of estimation capabilities of response surface methodology with artificial neural networks in a biochemical reaction. J. Food Eng. 78, 846854 (2007).

Article Google Scholar

I. Goodfellow, Y. Bengio, A. C. Deep Learning (MIT Press, 2016).

Myers, R. H. & Montgomery, D. C. Response surface methodology: Process and product in optimization using designed experiments (1995).

Mayer, D. T. & Lasley, J. F. The factor in egg yolk affecting the resistance, storage potentialities, and fertilizing capacity of mammalian spermatozoa. J. Anim. Sci. 4, 261269 (1945).

Article Google Scholar

Pace, M. M. & Graham, E. F. Components in egg yolk which protect bovine spermatozoa during freezing. J. Anim. Sci. 39, 11441149 (1974).

Article CAS Google Scholar

Liu, Z., Foote, R. H. & Brockett, C. C. Survival of bull sperm frozen at different rates in media varying in osmolarity. Cryobiology 37, 219230 (1998).

Article CAS Google Scholar

Purdy, P. H. & Graham, J. K. Effect of cholesterol-loaded cyclodextrin on the cryosurvival of bull sperm. Cryobiology 48, 3645 (2004).

Article CAS Google Scholar

Raheja, N., Grewal, S., Sharma, N., Kumar, N. & Choudhary, S. A review on semen extenders and additives used in cattle and buffalo bull semen preservation. J. Entomol. Zool. Stud. 6, 239245 (2018).

Google Scholar

Forero-Gonzalez, R. A. et al. Effects of bovine sperm cryopreservation using different freezing techniques and cryoprotective agents on plasma, acrosomal and mitochondrial membranes. Andrologia 44, 154159 (2012).

Article Google Scholar

El-Sheshtawy, R. I., Sisy, G. A. & El-Nattat, W. S. Effects of different concentrations of sucrose or trehalose on the post-thawing quality of cattle bull semen. Asian Pac. J. Reprod. 4, 2631 (2015).

Article Google Scholar

Woelders, H., Matthijs, A. & Engel, B. Effects of trehalose and sucrose, osmolality of the freezing medium, and cooling rate on viability and intactness of bull sperm after freezing and thawing. Cryobiology https://doi.org/10.1006/cryo.1997.2028 (1997).

Ahmad, E. & Aksoy, M. Trehalose as a cryoprotective agent for the sperm cells: A mini review. Anim. Heal. Prod. Hyg. 1, 123129 (2012).

Google Scholar

Foote, R. H. & Kaprotht, M. T. Large batch freezing of bull semen: Effect of time of freezing and fructose on fertility. J. Dairy Sci. 85, 453456 (2002).

Article CAS Google Scholar

Purdy, P. H. A review on goat sperm cryopreservation. Small Rumin. Res. 63, 215225 (2006).

Article Google Scholar

Fowler, A. & Toner, M. Cryo-injury and biopreservation. Ann. N. Y. Acad. Sci. 1066, 119135 (2006).

Article ADS Google Scholar

Hardeland, R., Reiter, R. J., Poeggeler, B. & Tan, D. The significance of the metabolism of the neurohormone melatonin: Antioxidative protection and formation of bioactive substances. Neurosci. Biobehav. Rev. 17, 347357 (1993).

Article CAS Google Scholar

Li, C. et al. Detection of nerve growth factor (NGF) and its specific receptor (TrkA) in ejaculated bovine sperm, and the effects of NGF on sperm function. Theriogenology 74, 16151622 (2010).

Article CAS Google Scholar

Saeednia, S., Shabani Nashtaei, M., Bahadoran, H., Aleyasin, A. & Amidi, F. Effect of nerve growth factor on sperm quality in asthenozoosprmic men during cryopreservation. Reprod. Biol. Endocrinol. 14, 18 (2016).

Article Google Scholar

Storn, R. & Price, K. Differential evolutiona simple and efficient heuristic for global optimization over continuous spaces. J. Glob. Optim. 11, 341359 (1997).

Article MathSciNet MATH Google Scholar

Awad, M. M. Effect of some permeating cryoprotectants on CASA motility results in cryopreserved bull spermatozoa. Anim. Reprod. Sci. 123, 157162 (2011).

Article CAS Google Scholar

Gororo, E., Makuza, S. M., Chidzwondo, F. & Chatiza, F. P. Variation in sperm cryosurvival is not modified by replacing the cryoprotectant glycerol with ethylene glycol in bulls. Reprod. Domest. Anim. 55, 12101218 (2020).

Article CAS Google Scholar

Rota, A., Milani, C., Cabianca, G. & Martini, M. Comparison between glycerol and ethylene glycol for dog semen cryopreservation. Theriogenology 65, 18481858 (2006).

Article CAS Google Scholar

Mehta, V., Pareek, P., Kumar, A. & Purohit, G. N. Comparative effect of different concentrations of glycerol and ethylene glycol and temperature on cryopreservation of ram semen. Res. J. Vet. Pract. 8, 1 (2020).

Article Google Scholar

Swelum, A. A., Mansour, H. A., Elsayed, A. A. & Amer, H. A. Comparing ethylene glycol with glycerol for cryopreservation of buffalo bull semen in egg-yolk containing extenders. Theriogenology 76, 833842 (2011).

Article CAS Google Scholar

Kowsar, R., Ronasi, S., Sadeghi, N., Sadeghi, K. & Miyamoto, A. Epidermal growth factor alleviates the negative impact of urea on frozen-thawed bovine sperm, but the subsequent developmental competence is compromised. Sci. Rep. 11, 113 (2021).

Article Google Scholar

Miller, W. J. & Vandemark, N. L. The influence of glycerol level, various temperature aspects and certain other factors on the survival of bull spermatozoa at sub-zero temperatures. J. Dairy Sci. 37, 4551 (1954).

Article CAS Google Scholar

Bhat, M. H., Blondin, P., Vincent, P. & Benson, J. D. Low concentrations of 3-O-methylglucose improve post thaw recovery in cryopreserved bovine spermatozoa. Cryobiology 95, 1519 (2020).

Article CAS Google Scholar

R Core Team. R: A Language and Environment for Statistical Computing. (2021).

Ogle, D. H., Wheeler, P. & Dinno, A. FSA: Fisheries Stock Analysis. (2020).

Wellek, S. & Ziegler, P. EQUIVNONINF: Testing for Equivalence and Noninferiority. (2021).

Wellek, S. Testing Statistical Hypotheses of Equivalence. (Chapman and Hall/CRC, 2010).

Tu, F. Experimental and Computational Approaches to Optimizing Bovine Gamete Cryopreservation. (University Of Saskatchewan, 2021).

Go here to read the rest:

Machine learning and hypothesis driven optimization of bull semen ... - Nature.com

Related Posts

Written by admin |

December 29th, 2022 at 12:20 am

Posted in Machine Learning




matomo tracker